''' Some tests for filters ''' from __future__ import division, print_function, absolute_import import sys import numpy as np from numpy.testing import (assert_equal, assert_raises, assert_allclose, assert_array_equal, TestCase, run_module_suite) import scipy.ndimage as sndi def test_ticket_701(): # Test generic filter sizes arr = np.arange(4).reshape((2,2)) func = lambda x: np.min(x) res = sndi.generic_filter(arr, func, size=(1,1)) # The following raises an error unless ticket 701 is fixed res2 = sndi.generic_filter(arr, func, size=1) assert_equal(res, res2) def test_gh_5430(): # At least one of these raises an error unless gh-5430 is # fixed. In py2k an int is implemented using a C long, so # which one fails depends on your system. In py3k there is only # one arbitrary precision integer type, so both should fail. sigma = np.int32(1) out = sndi._ni_support._normalize_sequence(sigma, 1) assert_equal(out, [sigma]) sigma = np.int64(1) out = sndi._ni_support._normalize_sequence(sigma, 1) assert_equal(out, [sigma]) # This worked before; make sure it still works sigma = 1 out = sndi._ni_support._normalize_sequence(sigma, 1) assert_equal(out, [sigma]) # This worked before; make sure it still works sigma = [1, 1] out = sndi._ni_support._normalize_sequence(sigma, 2) assert_equal(out, sigma) # Also include the OPs original example to make sure we fixed the issue x = np.random.normal(size=(256, 256)) perlin = np.zeros_like(x) for i in 2**np.arange(6): perlin += sndi.filters.gaussian_filter(x, i, mode="wrap") * i**2 # This also fixes gh-4106, show that the OPs example now runs. x = np.int64(21) sndi._ni_support._normalize_sequence(x, 0) def test_orders_gauss(): # Check order inputs to Gaussians arr = np.zeros((1,)) yield assert_equal, 0, sndi.gaussian_filter(arr, 1, order=0) yield assert_equal, 0, sndi.gaussian_filter(arr, 1, order=3) yield assert_raises, ValueError, sndi.gaussian_filter, arr, 1, -1 yield assert_raises, ValueError, sndi.gaussian_filter, arr, 1, 4 yield assert_equal, 0, sndi.gaussian_filter1d(arr, 1, axis=-1, order=0) yield assert_equal, 0, sndi.gaussian_filter1d(arr, 1, axis=-1, order=3) yield assert_raises, ValueError, sndi.gaussian_filter1d, arr, 1, -1, -1 yield assert_raises, ValueError, sndi.gaussian_filter1d, arr, 1, -1, 4 def test_valid_origins(): """Regression test for #1311.""" func = lambda x: np.mean(x) data = np.array([1,2,3,4,5], dtype=np.float64) assert_raises(ValueError, sndi.generic_filter, data, func, size=3, origin=2) func2 = lambda x, y: np.mean(x + y) assert_raises(ValueError, sndi.generic_filter1d, data, func, filter_size=3, origin=2) assert_raises(ValueError, sndi.percentile_filter, data, 0.2, size=3, origin=2) for filter in [sndi.uniform_filter, sndi.minimum_filter, sndi.maximum_filter, sndi.maximum_filter1d, sndi.median_filter, sndi.minimum_filter1d]: # This should work, since for size == 3, the valid range for origin is # -1 to 1. list(filter(data, 3, origin=-1)) list(filter(data, 3, origin=1)) # Just check this raises an error instead of silently accepting or # segfaulting. assert_raises(ValueError, filter, data, 3, origin=2) def test_gaussian_truncate(): # Test that Gaussian filters can be truncated at different widths. # These tests only check that the result has the expected number # of nonzero elements. arr = np.zeros((100, 100), float) arr[50, 50] = 1 num_nonzeros_2 = (sndi.gaussian_filter(arr, 5, truncate=2) > 0).sum() assert_equal(num_nonzeros_2, 21**2) num_nonzeros_5 = (sndi.gaussian_filter(arr, 5, truncate=5) > 0).sum() assert_equal(num_nonzeros_5, 51**2) # Test truncate when sigma is a sequence. f = sndi.gaussian_filter(arr, [0.5, 2.5], truncate=3.5) fpos = f > 0 n0 = fpos.any(axis=0).sum() # n0 should be 2*int(2.5*3.5 + 0.5) + 1 assert_equal(n0, 19) n1 = fpos.any(axis=1).sum() # n1 should be 2*int(0.5*3.5 + 0.5) + 1 assert_equal(n1, 5) # Test gaussian_filter1d. x = np.zeros(51) x[25] = 1 f = sndi.gaussian_filter1d(x, sigma=2, truncate=3.5) n = (f > 0).sum() assert_equal(n, 15) # Test gaussian_laplace y = sndi.gaussian_laplace(x, sigma=2, truncate=3.5) nonzero_indices = np.where(y != 0)[0] n = nonzero_indices.ptp() + 1 assert_equal(n, 15) # Test gaussian_gradient_magnitude y = sndi.gaussian_gradient_magnitude(x, sigma=2, truncate=3.5) nonzero_indices = np.where(y != 0)[0] n = nonzero_indices.ptp() + 1 assert_equal(n, 15) class TestThreading(TestCase): def check_func_thread(self, n, fun, args, out): from threading import Thread thrds = [Thread(target=fun, args=args, kwargs={'output': out[x]}) for x in range(n)] [t.start() for t in thrds] [t.join() for t in thrds] def check_func_serial(self, n, fun, args, out): for i in range(n): fun(*args, output=out[i]) def test_correlate1d(self): d = np.random.randn(5000) os = np.empty((4, d.size)) ot = np.empty_like(os) self.check_func_serial(4, sndi.correlate1d, (d, np.arange(5)), os) self.check_func_thread(4, sndi.correlate1d, (d, np.arange(5)), ot) assert_array_equal(os, ot) def test_correlate(self): d = np.random.randn(500, 500) k = np.random.randn(10, 10) os = np.empty([4] + list(d.shape)) ot = np.empty_like(os) self.check_func_serial(4, sndi.correlate, (d, k), os) self.check_func_thread(4, sndi.correlate, (d, k), ot) assert_array_equal(os, ot) def test_median_filter(self): d = np.random.randn(500, 500) os = np.empty([4] + list(d.shape)) ot = np.empty_like(os) self.check_func_serial(4, sndi.median_filter, (d, 3), os) self.check_func_thread(4, sndi.median_filter, (d, 3), ot) assert_array_equal(os, ot) def test_uniform_filter1d(self): d = np.random.randn(5000) os = np.empty((4, d.size)) ot = np.empty_like(os) self.check_func_serial(4, sndi.uniform_filter1d, (d, 5), os) self.check_func_thread(4, sndi.uniform_filter1d, (d, 5), ot) assert_array_equal(os, ot) def test_minmax_filter(self): d = np.random.randn(500, 500) os = np.empty([4] + list(d.shape)) ot = np.empty_like(os) self.check_func_serial(4, sndi.maximum_filter, (d, 3), os) self.check_func_thread(4, sndi.maximum_filter, (d, 3), ot) assert_array_equal(os, ot) self.check_func_serial(4, sndi.minimum_filter, (d, 3), os) self.check_func_thread(4, sndi.minimum_filter, (d, 3), ot) assert_array_equal(os, ot) def test_minmaximum_filter1d(): # Regression gh-3898 in_ = np.arange(10) out = sndi.minimum_filter1d(in_, 1) assert_equal(in_, out) out = sndi.maximum_filter1d(in_, 1) assert_equal(in_, out) # Test reflect out = sndi.minimum_filter1d(in_, 5, mode='reflect') assert_equal([0, 0, 0, 1, 2, 3, 4, 5, 6, 7], out) out = sndi.maximum_filter1d(in_, 5, mode='reflect') assert_equal([2, 3, 4, 5, 6, 7, 8, 9, 9, 9], out) #Test constant out = sndi.minimum_filter1d(in_, 5, mode='constant', cval=-1) assert_equal([-1, -1, 0, 1, 2, 3, 4, 5, -1, -1], out) out = sndi.maximum_filter1d(in_, 5, mode='constant', cval=10) assert_equal([10, 10, 4, 5, 6, 7, 8, 9, 10, 10], out) # Test nearest out = sndi.minimum_filter1d(in_, 5, mode='nearest') assert_equal([0, 0, 0, 1, 2, 3, 4, 5, 6, 7], out) out = sndi.maximum_filter1d(in_, 5, mode='nearest') assert_equal([2, 3, 4, 5, 6, 7, 8, 9, 9, 9], out) # Test wrap out = sndi.minimum_filter1d(in_, 5, mode='wrap') assert_equal([0, 0, 0, 1, 2, 3, 4, 5, 0, 0], out) out = sndi.maximum_filter1d(in_, 5, mode='wrap') assert_equal([9, 9, 4, 5, 6, 7, 8, 9, 9, 9], out) if __name__ == "__main__": run_module_suite(argv=sys.argv)