""" Feature agglomeration. Base classes and functions for performing feature agglomeration. """ # Author: V. Michel, A. Gramfort # License: BSD 3 clause import numpy as np from ..base import TransformerMixin from ..utils import check_array from ..utils.validation import check_is_fitted ############################################################################### # Mixin class for feature agglomeration. class AgglomerationTransform(TransformerMixin): """ A class for feature agglomeration via the transform interface """ pooling_func = np.mean def transform(self, X): """ Transform a new matrix using the built clustering Parameters ---------- X : array-like, shape = [n_samples, n_features] or [n_features] A M by N array of M observations in N dimensions or a length M array of M one-dimensional observations. Returns ------- Y : array, shape = [n_samples, n_clusters] or [n_clusters] The pooled values for each feature cluster. """ check_is_fitted(self, "labels_") pooling_func = self.pooling_func X = check_array(X) nX = [] if len(self.labels_) != X.shape[1]: raise ValueError("X has a different number of features than " "during fitting.") for l in np.unique(self.labels_): nX.append(pooling_func(X[:, self.labels_ == l], axis=1)) return np.array(nX).T def inverse_transform(self, Xred): """ Inverse the transformation. Return a vector of size nb_features with the values of Xred assigned to each group of features Parameters ---------- Xred : array-like, shape=[n_samples, n_clusters] or [n_clusters,] The values to be assigned to each cluster of samples Returns ------- X : array, shape=[n_samples, n_features] or [n_features] A vector of size n_samples with the values of Xred assigned to each of the cluster of samples. """ check_is_fitted(self, "labels_") unil, inverse = np.unique(self.labels_, return_inverse=True) return Xred[..., inverse]