""" Testing for the base module (sklearn.ensemble.base). """ # Authors: Gilles Louppe # License: BSD 3 clause import numpy as np from numpy.testing import assert_equal from nose.tools import assert_true from sklearn.utils.testing import assert_raise_message from sklearn.utils.testing import assert_not_equal from sklearn.datasets import load_iris from sklearn.ensemble import BaggingClassifier from sklearn.ensemble.base import _set_random_states from sklearn.linear_model import Perceptron from sklearn.externals.odict import OrderedDict from sklearn.discriminant_analysis import LinearDiscriminantAnalysis from sklearn.pipeline import Pipeline from sklearn.feature_selection import SelectFromModel def test_base(): # Check BaseEnsemble methods. ensemble = BaggingClassifier(base_estimator=Perceptron(random_state=None), n_estimators=3) iris = load_iris() ensemble.fit(iris.data, iris.target) ensemble.estimators_ = [] # empty the list and create estimators manually ensemble._make_estimator() random_state = np.random.RandomState(3) ensemble._make_estimator(random_state=random_state) ensemble._make_estimator(random_state=random_state) ensemble._make_estimator(append=False) assert_equal(3, len(ensemble)) assert_equal(3, len(ensemble.estimators_)) assert_true(isinstance(ensemble[0], Perceptron)) assert_equal(ensemble[0].random_state, None) assert_true(isinstance(ensemble[1].random_state, int)) assert_true(isinstance(ensemble[2].random_state, int)) assert_not_equal(ensemble[1].random_state, ensemble[2].random_state) def test_base_zero_n_estimators(): # Check that instantiating a BaseEnsemble with n_estimators<=0 raises # a ValueError. ensemble = BaggingClassifier(base_estimator=Perceptron(), n_estimators=0) iris = load_iris() assert_raise_message(ValueError, "n_estimators must be greater than zero, got 0.", ensemble.fit, iris.data, iris.target) def test_set_random_states(): # Linear Discriminant Analysis doesn't have random state: smoke test _set_random_states(LinearDiscriminantAnalysis(), random_state=17) clf1 = Perceptron(random_state=None) assert_equal(clf1.random_state, None) # check random_state is None still sets _set_random_states(clf1, None) assert_true(isinstance(clf1.random_state, int)) # check random_state fixes results in consistent initialisation _set_random_states(clf1, 3) assert_true(isinstance(clf1.random_state, int)) clf2 = Perceptron(random_state=None) _set_random_states(clf2, 3) assert_equal(clf1.random_state, clf2.random_state) # nested random_state def make_steps(): return [('sel', SelectFromModel(Perceptron(random_state=None))), ('clf', Perceptron(random_state=None))] est1 = Pipeline(make_steps()) _set_random_states(est1, 3) assert_true(isinstance(est1.steps[0][1].estimator.random_state, int)) assert_true(isinstance(est1.steps[1][1].random_state, int)) assert_not_equal(est1.get_params()['sel__estimator__random_state'], est1.get_params()['clf__random_state']) # ensure multiple random_state paramaters are invariant to get_params() # iteration order class AlphaParamPipeline(Pipeline): def get_params(self, *args, **kwargs): params = Pipeline.get_params(self, *args, **kwargs).items() return OrderedDict(sorted(params)) class RevParamPipeline(Pipeline): def get_params(self, *args, **kwargs): params = Pipeline.get_params(self, *args, **kwargs).items() return OrderedDict(sorted(params, reverse=True)) for cls in [AlphaParamPipeline, RevParamPipeline]: est2 = cls(make_steps()) _set_random_states(est2, 3) assert_equal(est1.get_params()['sel__estimator__random_state'], est2.get_params()['sel__estimator__random_state']) assert_equal(est1.get_params()['clf__random_state'], est2.get_params()['clf__random_state'])