# -*- coding: utf-8 -*- """Generic feature selection mixin""" # Authors: G. Varoquaux, A. Gramfort, L. Buitinck, J. Nothman # License: BSD 3 clause from abc import ABCMeta, abstractmethod from warnings import warn import numpy as np from scipy.sparse import issparse, csc_matrix from ..base import TransformerMixin from ..utils import check_array, safe_mask from ..externals import six class SelectorMixin(six.with_metaclass(ABCMeta, TransformerMixin)): """ Tranformer mixin that performs feature selection given a support mask This mixin provides a feature selector implementation with `transform` and `inverse_transform` functionality given an implementation of `_get_support_mask`. """ def get_support(self, indices=False): """ Get a mask, or integer index, of the features selected Parameters ---------- indices : boolean (default False) If True, the return value will be an array of integers, rather than a boolean mask. Returns ------- support : array An index that selects the retained features from a feature vector. If `indices` is False, this is a boolean array of shape [# input features], in which an element is True iff its corresponding feature is selected for retention. If `indices` is True, this is an integer array of shape [# output features] whose values are indices into the input feature vector. """ mask = self._get_support_mask() return mask if not indices else np.where(mask)[0] @abstractmethod def _get_support_mask(self): """ Get the boolean mask indicating which features are selected Returns ------- support : boolean array of shape [# input features] An element is True iff its corresponding feature is selected for retention. """ def transform(self, X): """Reduce X to the selected features. Parameters ---------- X : array of shape [n_samples, n_features] The input samples. Returns ------- X_r : array of shape [n_samples, n_selected_features] The input samples with only the selected features. """ X = check_array(X, accept_sparse='csr') mask = self.get_support() if not mask.any(): warn("No features were selected: either the data is" " too noisy or the selection test too strict.", UserWarning) return np.empty(0).reshape((X.shape[0], 0)) if len(mask) != X.shape[1]: raise ValueError("X has a different shape than during fitting.") return X[:, safe_mask(X, mask)] def inverse_transform(self, X): """ Reverse the transformation operation Parameters ---------- X : array of shape [n_samples, n_selected_features] The input samples. Returns ------- X_r : array of shape [n_samples, n_original_features] `X` with columns of zeros inserted where features would have been removed by `transform`. """ if issparse(X): X = X.tocsc() # insert additional entries in indptr: # e.g. if transform changed indptr from [0 2 6 7] to [0 2 3] # col_nonzeros here will be [2 0 1] so indptr becomes [0 2 2 3] it = self.inverse_transform(np.diff(X.indptr).reshape(1, -1)) col_nonzeros = it.ravel() indptr = np.concatenate([[0], np.cumsum(col_nonzeros)]) Xt = csc_matrix((X.data, X.indices, indptr), shape=(X.shape[0], len(indptr) - 1), dtype=X.dtype) return Xt support = self.get_support() X = check_array(X) if support.sum() != X.shape[1]: raise ValueError("X has a different shape than during fitting.") if X.ndim == 1: X = X[None, :] Xt = np.zeros((X.shape[0], support.size), dtype=X.dtype) Xt[:, support] = X return Xt