import numpy as np import scipy.sparse as sp from sklearn.datasets import make_regression from sklearn.linear_model import Ridge from sklearn.kernel_ridge import KernelRidge from sklearn.metrics.pairwise import pairwise_kernels from sklearn.utils.testing import ignore_warnings from sklearn.utils.testing import assert_array_almost_equal X, y = make_regression(n_features=10) Xcsr = sp.csr_matrix(X) Xcsc = sp.csc_matrix(X) Y = np.array([y, y]).T def test_kernel_ridge(): pred = Ridge(alpha=1, fit_intercept=False).fit(X, y).predict(X) pred2 = KernelRidge(kernel="linear", alpha=1).fit(X, y).predict(X) assert_array_almost_equal(pred, pred2) def test_kernel_ridge_csr(): pred = Ridge(alpha=1, fit_intercept=False, solver="cholesky").fit(Xcsr, y).predict(Xcsr) pred2 = KernelRidge(kernel="linear", alpha=1).fit(Xcsr, y).predict(Xcsr) assert_array_almost_equal(pred, pred2) def test_kernel_ridge_csc(): pred = Ridge(alpha=1, fit_intercept=False, solver="cholesky").fit(Xcsc, y).predict(Xcsc) pred2 = KernelRidge(kernel="linear", alpha=1).fit(Xcsc, y).predict(Xcsc) assert_array_almost_equal(pred, pred2) def test_kernel_ridge_singular_kernel(): # alpha=0 causes a LinAlgError in computing the dual coefficients, # which causes a fallback to a lstsq solver. This is tested here. pred = Ridge(alpha=0, fit_intercept=False).fit(X, y).predict(X) kr = KernelRidge(kernel="linear", alpha=0) ignore_warnings(kr.fit)(X, y) pred2 = kr.predict(X) assert_array_almost_equal(pred, pred2) def test_kernel_ridge_precomputed(): for kernel in ["linear", "rbf", "poly", "cosine"]: K = pairwise_kernels(X, X, metric=kernel) pred = KernelRidge(kernel=kernel).fit(X, y).predict(X) pred2 = KernelRidge(kernel="precomputed").fit(K, y).predict(K) assert_array_almost_equal(pred, pred2) def test_kernel_ridge_precomputed_kernel_unchanged(): K = np.dot(X, X.T) K2 = K.copy() KernelRidge(kernel="precomputed").fit(K, y) assert_array_almost_equal(K, K2) def test_kernel_ridge_sample_weights(): K = np.dot(X, X.T) # precomputed kernel sw = np.random.RandomState(0).rand(X.shape[0]) pred = Ridge(alpha=1, fit_intercept=False).fit(X, y, sample_weight=sw).predict(X) pred2 = KernelRidge(kernel="linear", alpha=1).fit(X, y, sample_weight=sw).predict(X) pred3 = KernelRidge(kernel="precomputed", alpha=1).fit(K, y, sample_weight=sw).predict(K) assert_array_almost_equal(pred, pred2) assert_array_almost_equal(pred, pred3) def test_kernel_ridge_multi_output(): pred = Ridge(alpha=1, fit_intercept=False).fit(X, Y).predict(X) pred2 = KernelRidge(kernel="linear", alpha=1).fit(X, Y).predict(X) assert_array_almost_equal(pred, pred2) pred3 = KernelRidge(kernel="linear", alpha=1).fit(X, y).predict(X) pred3 = np.array([pred3, pred3]).T assert_array_almost_equal(pred2, pred3)